Hmmm... Windows often generates stuff no one can quantify with any degree of certainty. I gave up long ago. All I use my Windows 10 for now is the odd bit of stuff connected with the site and watching Manchester United games via Nox Android emulator and GPB Sports that are not being shown on Brazilian TV.
If I understand correctly you can access this data using Linux? If you have another location you can transfer this too I would suggest to do this and then reformat the drive. Hopefully Windows will then see it correctly again and you can transfer the data back.
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Buy a Hoover and prove technology sucks.
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